Laboratory of Multi-omic Integrative Bioinformatics

Projects

We develop open-source computational tools and resources to advance multi-omics biology and medicine. All of our software is freely available on GitHub.

Multiverse
Multiverse

Multiverse is a reproducible benchmarking tool for multimodal single-cell integration, without making bioinformaticians become infrastructure engineers.

MIMA
MIMA

MIMA is a Multimodal Variational Autoencoder designed for the integration of heterogeneous molecular layers, enabling a comprehensive multimodal representation of the cellular state.

Subcellspace
Subcellspace

Subcellspace integrates subcellular resolution transcriptomics with conventional microscopy to map RNA localisation within individual cells. It leverages deep neural network architectures to fuse morphological and molecular information at unprecedented resolution.

All Projects

Multiverse
Multiverse

Multiverse is a reproducible benchmarking tool for multimodal single-cell integration, without making bioinformaticians become infrastructure engineers.

MIMA
MIMA

MIMA is a Multimodal Variational Autoencoder designed for the integration of heterogeneous molecular layers, enabling a comprehensive multimodal representation of the cellular state.

Subcellspace
Subcellspace

Subcellspace integrates subcellular resolution transcriptomics with conventional microscopy to map RNA localisation within individual cells. It leverages deep neural network architectures to fuse morphological and molecular information at unprecedented resolution.